affxparser
Affymetrix File Parsing SDK
Bioconductor version: Release (3.19)
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("affxparser")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affxparser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software |
| Version | 1.76.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (19 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.14.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/HenrikBengtsson/affxparser |
| Bug Reports | https://github.com/HenrikBengtsson/affxparser/issues |
See More
| Suggests | R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles |
| Linking To | |
| Enhances | |
| Depends On Me | ITALICS, pdInfoBuilder |
| Imports Me | EventPointer, GeneRegionScan, ITALICS, affyILM, cn.farms, crossmeta, oligo |
| Suggests Me | TIN, aroma.affymetrix, aroma.apd |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affxparser_1.76.0.tar.gz |
| Windows Binary (x86_64) | affxparser_1.76.0.zip (64-bit only) |
| macOS Binary (x86_64) | affxparser_1.76.0.tgz |
| macOS Binary (arm64) | affxparser_1.76.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affxparser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affxparser |
| Bioc Package Browser | https://code.bioconductor.org/browse/affxparser/ |
| Package Short Url | https://bioconductor.org/packages/affxparser/ |
| Package Downloads Report | Download Stats |