SimBindProfiles
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SimBindProfiles.
Similar Binding Profiles
Bioconductor version: Release (3.19)
SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.
Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell
Maintainer: Bettina Fischer <bef22 at cam.ac.uk>
citation("SimBindProfiles")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SimBindProfiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), methods, Ringo |
| Imports | limma, mclust, Biobase |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SimBindProfiles |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SimBindProfiles |
| Package Short Url | https://bioconductor.org/packages/SimBindProfiles/ |
| Package Downloads Report | Download Stats |