Rtpca
Thermal proximity co-aggregation with R
Bioconductor version: Release (3.19)
R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.
Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]
Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>
Citation (from within R, enter
citation("Rtpca")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rtpca")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rtpca")| Introduction to Rtpca | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Proteomics, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0), stats, dplyr, tidyr |
| Imports | Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble |
| System Requirements | |
| URL | |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | knitr, BiocStyle, TPP, testthat, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rtpca_1.14.0.tar.gz |
| Windows Binary (x86_64) | Rtpca_1.14.0.zip (64-bit only) |
| macOS Binary (x86_64) | Rtpca_1.14.0.tgz |
| macOS Binary (arm64) | Rtpca_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rtpca |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rtpca |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rtpca/ |
| Package Short Url | https://bioconductor.org/packages/Rtpca/ |
| Package Downloads Report | Download Stats |