RefPlus
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RefPlus.
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Bioconductor version: Release (3.19)
The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.
Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>
Maintainer: Kai-Ming Chang <kaiming at gmail.com>
citation("RefPlus")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RefPlus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.74.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | affydata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | RefPlus_1.74.0.zip |
| macOS Binary (x86_64) | RefPlus_1.74.0.tgz |
| macOS Binary (arm64) | RefPlus_1.74.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RefPlus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RefPlus |
| Package Short Url | https://bioconductor.org/packages/RefPlus/ |
| Package Downloads Report | Download Stats |