ReQON
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ReQON.
Recalibrating Quality Of Nucleotides
Bioconductor version: Release (3.19)
Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.
Author: Christopher Cabanski, Keary Cavin, Chris Bizon
Maintainer: Christopher Cabanski <cabanskc at gmail.com>
citation("ReQON")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ReQON")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
| License | GPL-2 |
| Depends | R (>= 3.0.2), Rsamtools, seqbias |
| Imports | rJava, graphics, stats, utils, grDevices |
| System Requirements | Java version >= 1.6 |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ReQON |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ReQON |
| Package Short Url | https://bioconductor.org/packages/ReQON/ |
| Package Downloads Report | Download Stats |