RCASPAR
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
Bioconductor version: Release (3.19)
The package is the R-version of the C-based software \bold{CASPAR} (Kaderali,2006: \url{http://bioinformatics.oxfordjournals.org/content/22/12/1495}). It is meant to help predict survival times in the presence of high-dimensional explanatory covariates. The model is a piecewise baseline hazard Cox regression model with an Lq-norm based prior that selects for the most important regression coefficients, and in turn the most relevant covariates for survival analysis. It was primarily tried on gene expression and aCGH data, but can be used on any other type of high-dimensional data and in disciplines other than biology and medicine.
Author: Douaa Mugahid, Lars Kaderali
Maintainer: Douaa Mugahid <douaa.mugahid at gmail.com>, Lars Kaderali <lars.kaderali at uni-greifswald.de>
citation("RCASPAR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCASPAR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCASPAR")| RCASPAR: Software for high-dimentional-data driven survival time prediction | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Genetics, Proteomics, Software, Visualization, aCGH |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
| License | GPL (>=3) |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RCASPAR_1.50.0.tar.gz |
| Windows Binary (x86_64) | RCASPAR_1.50.0.zip |
| macOS Binary (x86_64) | RCASPAR_1.50.0.tgz |
| macOS Binary (arm64) | RCASPAR_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RCASPAR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RCASPAR |
| Bioc Package Browser | https://code.bioconductor.org/browse/RCASPAR/ |
| Package Short Url | https://bioconductor.org/packages/RCASPAR/ |
| Package Downloads Report | Download Stats |