RBioFormats

R interface to Bio-Formats

Bioconductor version: Release (3.19)

An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

Author: Andrzej Oleś [aut, cre] , John Lee [ctb]

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("RBioFormats")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RBioFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RBioFormats")

RBioFormats: an R interface to the Bio-Formats library	HTML	R Script
Reference Manual	PDF

biocViews	DataImport, Software
Version	1.4.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	GPL-3
Depends
Imports	EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats
System Requirements	Java (>= 1.7)
URL	https://github.com/aoles/RBioFormats
Bug Reports	https://github.com/aoles/RBioFormats/issues

Suggests	BiocStyle, knitr, testthat, xml2
Linking To
Enhances
Depends On Me
Imports Me	SpatialOmicsOverlay
Suggests Me	SpatialFeatureExperiment, Voyager
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	RBioFormats_1.4.0.tar.gz
Windows Binary (x86_64)	RBioFormats_1.4.0.zip
macOS Binary (x86_64)	RBioFormats_1.4.0.tgz
macOS Binary (arm64)	RBioFormats_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RBioFormats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RBioFormats
Bioc Package Browser	https://code.bioconductor.org/browse/RBioFormats/
Package Short Url	https://bioconductor.org/packages/RBioFormats/
Package Downloads Report	Download Stats