PloGO2
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PloGO2.
Plot Gene Ontology and KEGG pathway Annotation and Abundance
Bioconductor version: Release (3.19)
Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.
Author: Dana Pascovici, Jemma Wu
Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>
citation("PloGO2")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PloGO2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), GO.db, GOstats |
| Imports | lattice, httr, openxlsx, xtable |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | PloGO2_1.16.0.zip |
| macOS Binary (x86_64) | PloGO2_1.16.0.tgz |
| macOS Binary (arm64) | PloGO2_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PloGO2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PloGO2 |
| Package Short Url | https://bioconductor.org/packages/PloGO2/ |
| Package Downloads Report | Download Stats |