OncoScore
A tool to identify potentially oncogenic genes
Bioconductor version: Release (3.19)
OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
Author: Luca De Sano [cre, aut] , Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut]
, Roberta Spinelli [ctb]
Maintainer: Luca De Sano <luca.desano at gmail.com>
citation("OncoScore")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OncoScore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OncoScore")
Introduction | HTML | R Script |
Running OncoScore | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | BiomedicalInformatics, Software |
Version | 1.32.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | file LICENSE |
Depends | R (>= 4.1.0) |
Imports | biomaRt, grDevices, graphics, utils, methods |
System Requirements | |
URL | https://github.com/danro9685/OncoScore |
Bug Reports | https://github.com/danro9685/OncoScore |
See More
Suggests | BiocGenerics, BiocStyle, knitr, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | OncoScore_1.32.0.tar.gz |
Windows Binary | OncoScore_1.32.0.zip |
macOS Binary (x86_64) | OncoScore_1.32.0.tgz |
macOS Binary (arm64) | OncoScore_1.32.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/OncoScore |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OncoScore |
Bioc Package Browser | https://code.bioconductor.org/browse/OncoScore/ |
Package Short Url | https://bioconductor.org/packages/OncoScore/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |