NTW

Predict gene network using an Ordinary Differential Equation (ODE) based method

Bioconductor version: Release (3.19)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Citation (from within R, enter citation("NTW")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")

NTW vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Preprocessing, Software
Version	1.54.0
In Bioconductor since	BioC 2.7 (R-2.12) (14 years)
License	GPL-2
Depends	R (>= 2.3.0)
Imports	mvtnorm, stats, utils
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NTW_1.54.0.tar.gz
Windows Binary (x86_64)	NTW_1.54.0.zip
macOS Binary (x86_64)	NTW_1.54.0.tgz
macOS Binary (arm64)	NTW_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NTW
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NTW
Bioc Package Browser	https://code.bioconductor.org/browse/NTW/
Package Short Url	https://bioconductor.org/packages/NTW/
Package Downloads Report	Download Stats