CancerInSilico
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CancerInSilico.
An R interface for computational modeling of tumor progression
Bioconductor version: Release (3.19)
The CancerInSilico package provides an R interface for running mathematical models of tumor progresson and generating gene expression data from the results. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.
Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig
Maintainer: Thomas D. Sherman <tomsherman159 at gmail.com>, Elana J. Fertig <ejfertig at jhmi.edu>
citation("CancerInSilico")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CancerInSilico")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | BiomedicalInformatics, CellBiology, GeneExpression, ImmunoOncology, MathematicalBiology, RNASeq, SingleCell, Software, SystemsBiology |
| Version | 2.24.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | GPL-2 |
| Depends | R (>= 3.4), Rcpp |
| Imports | methods, utils, graphics, stats |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl, gplots |
| Linking To | Rcpp, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | CancerInSilico_2.24.0.zip |
| macOS Binary (x86_64) | CancerInSilico_2.24.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CancerInSilico |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CancerInSilico |
| Package Short Url | https://bioconductor.org/packages/CancerInSilico/ |
| Package Downloads Report | Download Stats |