AffyRNADegradation
Analyze and correct probe positional bias in microarray data due to RNA degradation
Bioconductor version: Release (3.19)
The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.
Author: Mario Fasold
Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>
citation("AffyRNADegradation")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffyRNADegradation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffyRNADegradation")| AffyRNADegradation Example | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.9.0), methods, affy |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | AmpAffyExample, hgu133acdf |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AffyRNADegradation_1.50.0.tar.gz |
| Windows Binary (x86_64) | AffyRNADegradation_1.50.0.zip |
| macOS Binary (x86_64) | AffyRNADegradation_1.50.0.tgz |
| macOS Binary (arm64) | AffyRNADegradation_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AffyRNADegradation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AffyRNADegradation |
| Bioc Package Browser | https://code.bioconductor.org/browse/AffyRNADegradation/ |
| Package Short Url | https://bioconductor.org/packages/AffyRNADegradation/ |
| Package Downloads Report | Download Stats |