addValidationData | addValidationData |
addValidationData-method | addValidationData |
characterOrNA | characterOrNA Class union of character, null and missing |
characterOrNA-class | characterOrNA Class union of character, null and missing |
ClustAllObject-class | ClustAllObject |
cluster2data | cluster2data: Export selected stratification(s) |
cluster2data-method | cluster2data: Export selected stratification(s) |
createClustAll | createClustAll: Creates ClustAllObject |
createClustAll-method | createClustAll: Creates ClustAllObject |
dataImputed | dataImputed accession method |
dataImputed-method | dataImputed accession method |
dataOriginal | dataOriginal accession method |
dataOriginal-method | dataOriginal accession method |
dataValidation | dataValidation accession method |
dataValidation-method | dataValidation accession method |
extractData | extractData |
extractData-method | extractData |
extractResults | extractResults |
extractResults-method | extractResults |
initialize-method | initializeClustAllObject |
JACCARD_DISTANCE_F | JACCARD_DISTANCE_F accession method |
JACCARD_DISTANCE_F-method | JACCARD_DISTANCE_F accession method |
listOrNULL | Class Union listOrNULL |
listOrNULL-class | Class Union listOrNULL |
logicalOrNA | logicalOrNA |
logicalOrNA-class | logicalOrNA |
matrixOrNULL | matrixOrNULL |
matrixOrNULL-class | matrixOrNULL |
nImputation | nImputation accession method |
nImputation-method | nImputation accession method |
numericOrCharacter | numericOrCharacter |
numericOrCharacter-class | numericOrCharacter |
numericOrNA | Class Union numericOrNA |
numericOrNA-class | Class Union numericOrNA |
obj_noNA1 | obj_noNA1: Processed wdbc dataset for testing purposed |
obj_noNA1simplify | obj_noNA1simplify: Processed wdbc dataset for testing purposed |
obj_noNAno1Validation | obj_noNAno1Validation: Processed wdbc dataset for testing purposed |
plotJACCARD | plotJACCARD: Heatmap of robust stratification distances based on Jaccard similarity |
plotJACCARD-method | plotJACCARD: Heatmap of robust stratification distances based on Jaccard similarity |
plotSANKEY | plotSANKEY: Plots Sankey Diagram showing the cluster distribution and shifts between a pair of stratifications derived from ClustAllObject |
plotSANKEY-method | plotSANKEY: Plots Sankey Diagram showing the cluster distribution and shifts between a pair of stratifications derived from ClustAllObject |
processed | processed accession method |
processed-method | processed accession method |
resStratification | resStratification: Show the representative stratifications |
resStratification-method | resStratification: Show the representative stratifications |
runClustAll | ClustAll: Data driven strategy to find hidden subgroups of patients within complex diseases using clinical data |
runClustAll-method | ClustAll: Data driven strategy to find hidden subgroups of patients within complex diseases using clinical data |
show-method | show method for ClustAllObject |
showData | data accession method |
showData-method | data accession method |
summary_clusters | summary_clusters accession method |
summary_clusters-method | summary_clusters accession method |
validateStratification | validateStratification: calculates the sensitivity and specificity of selected stratification |
validateStratification-method | validateStratification: calculates the sensitivity and specificity of selected stratification |
wdbc | wdbc: Diagnostic Wisconsin Breast Cancer Database. |
wdbcMIDS | wdbcMIDS: Diagnostic Wisconsin Breast Cancer Database with imputed values |
wdbcNA | wdbcNA: Diagnostic Wisconsin Breast Cancer Database with missing values |