chromhmmData
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see chromhmmData.
Chromosome Size, Coordinates and Anchor Files
Bioconductor version: 3.18
Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.
Author: Mahmoud Ahmed [aut, cre] 
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>
citation("chromhmmData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chromhmmData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromhmmData")| chromhmmData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, Homo_sapiens, Mus_musculus |
| Version | 0.99.2 |
| License | GPL-3 |
| Depends | R (>= 4.1) |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/MahShaaban/chromhmmData/issues |
See More
| Suggests | rmarkdown, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | segmenter |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chromhmmData_0.99.2.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/chromhmmData/ |
| Package Downloads Report | Download Stats |