riboSeqR

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: 3.18

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

biocViews	Genetics, RiboSeq, Sequencing, Software, Visualization
Version	1.36.0
In Bioconductor since	BioC 3.0 (R-3.1) (9.5 years)
License	GPL-3
Depends	R (>= 3.0.2), methods, GenomicRanges, abind
Imports	Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
System Requirements
URL

Suggests	BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	riboSeqR_1.36.0.tar.gz
Windows Binary	riboSeqR_1.36.0.zip (64-bit only)
macOS Binary (x86_64)	riboSeqR_1.36.0.tgz
macOS Binary (arm64)	riboSeqR_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/riboSeqR
Bioc Package Browser	https://code.bioconductor.org/browse/riboSeqR/
Package Short Url	https://bioconductor.org/packages/riboSeqR/
Package Downloads Report	Download Stats