miRBaseConverter
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see miRBaseConverter.
A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Bioconductor version: 3.18
A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.
Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>
Maintainer: Taosheng Xu<taosheng.x at gmail.com>
citation("miRBaseConverter")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRBaseConverter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRBaseConverter")| miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, miRNA |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | stats |
| System Requirements | |
| URL | https://github.com/taoshengxu/miRBaseConverter |
| Bug Reports | https://github.com/taoshengxu/miRBaseConverter/issues |
See More
| Suggests | BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | SPONGE |
| Suggests Me | EpiMix |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRBaseConverter_1.26.0.tar.gz |
| Windows Binary | miRBaseConverter_1.26.0.zip (64-bit only) |
| macOS Binary (x86_64) | miRBaseConverter_1.26.0.tgz |
| macOS Binary (arm64) | miRBaseConverter_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRBaseConverter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miRBaseConverter |
| Bioc Package Browser | https://code.bioconductor.org/browse/miRBaseConverter/ |
| Package Short Url | https://bioconductor.org/packages/miRBaseConverter/ |
| Package Downloads Report | Download Stats |