hierinf

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see hierinf.

Hierarchical Inference

Bioconductor version: 3.18

Tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

Author: Claude Renaux [aut, cre], Laura Buzdugan [aut], Markus Kalisch [aut], Peter Bühlmann [aut]

Maintainer: Claude Renaux <renaux at stat.math.ethz.ch>

Citation (from within R, enter citation("hierinf")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hierinf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hierinf")

vignette-hierinf.Rnw	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, GenomeWideAssociation, LinkageDisequilibrium, Regression, SNP, Software
Version	1.20.0
In Bioconductor since	BioC 3.8 (R-3.5) (5.5 years)
License	GPL-3 \| file LICENSE
Depends	R (>= 3.6.0)
Imports	fmsb, glmnet, methods, parallel, stats
System Requirements
URL

Suggests	knitr, MASS, testthat
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Depends On Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hierinf_1.20.0.tar.gz
Windows Binary	hierinf_1.20.0.zip
macOS Binary (x86_64)	hierinf_1.20.0.tgz
macOS Binary (arm64)	hierinf_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hierinf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hierinf
Bioc Package Browser	https://code.bioconductor.org/browse/hierinf/
Package Short Url	https://bioconductor.org/packages/hierinf/
Package Downloads Report	Download Stats