BioTIP
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see BioTIP.
BioTIP: An R package for characterization of Biological Tipping-Point
Bioconductor version: 3.18
Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.
Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang
Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>
citation("BioTIP")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioTIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioTIP")
BioTIP- an R package for characterization of Biological Tipping-Point | HTML | R Script |
Reference Manual |
Details
biocViews | GeneExpression, RNASeq, Sequencing, Software, Transcription |
Version | 1.16.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
License | GPL-2 |
Depends | R (>= 3.6) |
Imports | igraph, cluster, psych, stringr, GenomicRanges, MASS, scran |
System Requirements | |
URL | https://github.com/xyang2uchicago/BioTIP |
See More
Suggests | knitr, markdown, base, rmarkdown, ggplot2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BioTIP_1.16.0.tar.gz |
Windows Binary | BioTIP_1.16.0.zip (64-bit only) |
macOS Binary (x86_64) | BioTIP_1.16.0.tgz |
macOS Binary (arm64) | BioTIP_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BioTIP |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioTIP |
Bioc Package Browser | https://code.bioconductor.org/browse/BioTIP/ |
Package Short Url | https://bioconductor.org/packages/BioTIP/ |
Package Downloads Report | Download Stats |