Bioconductor version: Release (3.17)
DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R,
enter citation("DNAZooData")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DNAZooData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAZooData")
HTML | R Script | DNAZooData |
Reference Manual | ||
Text | LICENSE |
biocViews | ExperimentData, SequencingData |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.2), HiCExperiment |
Imports | BiocFileCache, S4Vectors, rjson, utils, tools |
LinkingTo | |
Suggests | dplyr, testthat, methods, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/js2264/DNAZooData |
BugReports | https://github.com/js2264/DNAZooData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DNAZooData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/DNAZooData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAZooData |
Package Short Url | https://bioconductor.org/packages/DNAZooData/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: