CoSIAdata

DOI: 10.18129/B9.bioc.CoSIAdata  

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Bioconductor version: Release (3.17)

Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.

Author: Anisha Haldar [aut] , Vishal H. Oza [aut] , Amanda D. Clark [cre, aut] , Nathaniel S. DeVoss [aut] , Brittany N. Lasseigne [aut]

Maintainer: Amanda D. Clark <amanda at freshairfamily.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoSIAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoSIAdata")

 

HTML	R Script	CoSIAdata
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.3.0), ExperimentHub(>= 2.6.0)
Imports
LinkingTo
Suggests	BiocStyle(>= 2.26.0), utils (>= 4.3.0), AnnotationHub(>= 3.7.3), knitr (>= 1.42)
SystemRequirements
Enhances
URL
BugReports	https://github.com/lasseignelab/CoSIAdata/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoSIAdata_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CoSIAdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CoSIAdata
Package Short Url	https://bioconductor.org/packages/CoSIAdata/
Package Downloads Report	Download Stats