BSgenome.Hsapiens.UCSC.hg19

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19  

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Bioconductor version: Release (3.17)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.3
License	Artistic-2.0
Depends	BSgenome(>= 1.54.0)
Imports	BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	annotation, BSgenome.Hsapiens.UCSC.hg19.masked, CODEX, SCOPE, sequencing, traseR, variants
Imports Me	appreci8R, ATACCoGAPS, brainflowprobes, BSgenome.Hsapiens.UCSC.hg19.masked, cfDNAPro, ChIPComp, circRNAprofiler, decompTumor2Sig, HiLDA, katdetectr, MADSEQ, musicatk, RareVariantVis, RCAS, TCGAWorkflow, trena, YAPSA
Suggests Me	AneuFinder, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CNVfilteR, CRISPRseek, customProDB, DAMEfinder, DNAshapeR, EpiCompare, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GRaNIE, GreyListChIP, GUIDEseq, Gviz, h5vc, HiCDCPlus, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, maftools, MEDIPS, MesKit, MethReg, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, pageRank, pipeFrame, plotgardener, plyranges, ProteoDisco, qsea, R453Plus1Toolbox, REMP, rGADEM, RiboCrypt, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SigsPack, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh37, StructuralVariantAnnotation, supersigs, svaNUMT, UMI4Cats, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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