This vignette provides links to videos demonstrating some of the functionalities of CytoPipeline R package suite. It is distributed, as well as the accompanying videos, under a CC BY-SA license.
CytoPipeline 1.0.2
## R version 4.3.1 (2023-06-16)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.2 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.17-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] CytoPipeline_1.0.2 BiocStyle_2.28.0
##
## loaded via a namespace (and not attached):
## [1] changepoint_2.2.4 tidyselect_1.2.0 farver_2.1.1
## [4] dplyr_1.1.2 blob_1.2.4 filelock_1.0.2
## [7] fastmap_1.1.1 BiocFileCache_2.8.0 XML_3.99-0.14
## [10] digest_0.6.32 lifecycle_1.0.3 cluster_2.1.4
## [13] RSQLite_2.3.1 magrittr_2.0.3 compiler_4.3.1
## [16] rlang_1.1.1 sass_0.4.6 tools_4.3.1
## [19] utf8_1.2.3 yaml_2.3.7 data.table_1.14.8
## [22] knitr_1.43 labeling_0.4.2 bit_4.0.5
## [25] curl_5.0.1 diagram_1.6.5 plyr_1.8.8
## [28] RColorBrewer_1.1-3 withr_2.5.0 purrr_1.0.1
## [31] RProtoBufLib_2.12.0 BiocGenerics_0.46.0 PeacoQC_1.10.0
## [34] grid_4.3.1 stats4_4.3.1 fansi_1.0.4
## [37] flowAI_1.30.0 colorspace_2.1-0 ggplot2_3.4.2
## [40] scales_1.2.1 iterators_1.0.14 cli_3.6.1
## [43] rmarkdown_2.23 crayon_1.5.2 ncdfFlow_2.46.0
## [46] generics_0.1.3 reshape2_1.4.4 httr_1.4.6
## [49] rjson_0.2.21 DBI_1.1.3 cachem_1.0.8
## [52] flowCore_2.12.0 stringr_1.5.0 zlibbioc_1.46.0
## [55] parallel_4.3.1 BiocManager_1.30.21 matrixStats_1.0.0
## [58] vctrs_0.6.3 jsonlite_1.8.7 cytolib_2.12.0
## [61] bookdown_0.34 IRanges_2.34.1 GetoptLong_1.0.5
## [64] S4Vectors_0.38.1 bit64_4.0.5 clue_0.3-64
## [67] Rgraphviz_2.44.0 magick_2.7.4 foreach_1.5.2
## [70] jquerylib_0.1.4 hexbin_1.28.3 glue_1.6.2
## [73] codetools_0.2-19 stringi_1.7.12 gtable_0.3.3
## [76] shape_1.4.6 ggcyto_1.28.0 ComplexHeatmap_2.16.0
## [79] munsell_0.5.0 tibble_3.2.1 pillar_1.9.0
## [82] htmltools_0.5.5 graph_1.78.0 circlize_0.4.15
## [85] R6_2.5.1 dbplyr_2.3.2 doParallel_1.0.17
## [88] evaluate_0.21 flowWorkspace_4.12.0 lattice_0.21-8
## [91] Biobase_2.60.0 highr_0.10 png_0.1-8
## [94] memoise_2.0.1 bslib_0.5.0 Rcpp_1.0.10
## [97] gridExtra_2.3 xfun_0.39 zoo_1.8-12
## [100] pkgconfig_2.0.3 GlobalOptions_0.1.2