Bioconductor version: Release (3.17)
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
Citation (from within R,
enter citation("shinyMethyl")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("shinyMethyl")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")
HTML | R Script | shinyMethyl: interactive visualization of Illumina 450K methylation arrays |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Version | 1.36.1 |
In Bioconductor since | BioC 3.0 (R-3.1) (9 years) |
License | Artistic-2.0 |
Depends | |
Imports | Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils |
LinkingTo | |
Suggests | shinyMethylData, minfiData, BiocStyle, knitr, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/Jfortin1/shinyMethyl |
BugReports | https://github.com/Jfortin1/shinyMethyl |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | shinyMethyl_1.36.1.tar.gz |
Windows Binary | shinyMethyl_1.36.1.zip |
macOS Binary (x86_64) | shinyMethyl_1.36.1.tgz |
macOS Binary (arm64) | shinyMethyl_1.36.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/shinyMethyl |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shinyMethyl |
Bioc Package Browser | https://code.bioconductor.org/browse/shinyMethyl/ |
Package Short Url | https://bioconductor.org/packages/shinyMethyl/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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