savR

DOI: 10.18129/B9.bioc.savR  

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files

Bioconductor version: Release (3.17)

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")

 

PDF	R Script	Using savR
PDF		Reference Manual

Details

biocViews	Sequencing, Software
Version	1.37.0
In Bioconductor since	BioC 2.14 (R-3.1) (9.5 years)
License	AGPL-3
Depends	ggplot2
Imports	methods, reshape2, scales, gridExtra, XML
LinkingTo
Suggests	Cairo, testthat
SystemRequirements
Enhances
URL	https://github.com/bcalder/savR
BugReports	https://github.com/bcalder/savR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	savR_1.37.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/savR
Bioc Package Browser	https://code.bioconductor.org/browse/savR/
Package Short Url	https://bioconductor.org/packages/savR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive