rhdf5client

DOI: 10.18129/B9.bioc.rhdf5client  

Access HDF5 content from HDF Scalable Data Service

Bioconductor version: Release (3.17)

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

Author: Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut], Vincent Carey [cre, aut]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5client")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5client")

 

HTML	R Script	HSDSArray DelayedArray backend
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.22.3
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	Artistic-2.0
Depends	R (>= 3.6), methods, DelayedArray
Imports	httr, rjson, utils, data.table
LinkingTo
Suggests	knitr, testthat, BiocStyle, DT, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	restfulSE
Suggests Me	BiocOncoTK, HumanTranscriptomeCompendium, restfulSEData
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rhdf5client_1.22.3.tar.gz
Windows Binary	rhdf5client_1.22.3.zip
macOS Binary (x86_64)	rhdf5client_1.22.3.tgz
macOS Binary (arm64)	rhdf5client_1.22.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rhdf5client
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rhdf5client
Bioc Package Browser	https://code.bioconductor.org/browse/rhdf5client/
Package Short Url	https://bioconductor.org/packages/rhdf5client/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive