This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genotypeeval.
Bioconductor version: Release (3.17)
Takes in a gVCF or VCF and reports metrics to assess quality of calls.
Author: Jennifer Tom [aut, cre]
Maintainer: Jennifer Tom <tom.jennifer at gene.com>
Citation (from within R,
enter citation("genotypeeval")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("genotypeeval")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | BatchEffect, DataImport, Genetics, SNP, Sequencing, Software, VariantAnnotation |
Version | 1.31.1 |
In Bioconductor since | BioC 3.2 (R-3.2) (8 years) |
License | file LICENSE |
Depends | R (>= 3.4.0), VariantAnnotation |
Imports | ggplot2, rtracklayer, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, methods, BiocParallel, graphics, stats |
LinkingTo | |
Suggests | rmarkdown, testthat, SNPlocs.Hsapiens.dbSNP141.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | genotypeeval_1.31.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/genotypeeval |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genotypeeval |
Package Short Url | https://bioconductor.org/packages/genotypeeval/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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