flowGate

DOI: 10.18129/B9.bioc.flowGate  

Interactive Cytometry Gating in R

Bioconductor version: Release (3.17)

flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.

Author: Andrew Wight [aut, cre], Harvey Cantor [aut, ldr]

Maintainer: Andrew Wight <andrew.wight10 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowGate")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowGate")

 

HTML	R Script	flowGate
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, FlowCytometry, ImmunoOncology, Preprocessing, Software, WorkflowStep
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends	flowWorkspace(>= 4.0.6), ggcyto(>= 1.16.0), R (>= 4.2)
Imports	shiny (>= 1.5.0), BiocManager (>= 1.30.10), flowCore(>= 2.0.1), dplyr (>= 1.0.0), ggplot2 (>= 3.3.2), rlang (>= 0.4.7), purrr, tibble, methods
LinkingTo
Suggests	knitr, rmarkdown, stringr, tidyverse, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowGate_1.0.0.tar.gz
Windows Binary	flowGate_1.0.0.zip (64-bit only)
macOS Binary (x86_64)	flowGate_1.0.0.tgz
macOS Binary (arm64)	flowGate_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowGate
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowGate
Bioc Package Browser	https://code.bioconductor.org/browse/flowGate/
Package Short Url	https://bioconductor.org/packages/flowGate/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive