farms

DOI: 10.18129/B9.bioc.farms  

FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: Release (3.17)

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("farms")

 

PDF	R Script	Using farms
PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version	1.52.0
In Bioconductor since	BioC 2.7 (R-2.12) (13 years)
License	LGPL (>= 2.1)
Depends	R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports	affy, MASS, Biobase(>= 1.13.41), methods, graphics
LinkingTo
Suggests	affydata, Biobase, utils
SystemRequirements
Enhances
URL	http://www.bioinf.jku.at/software/farms/farms.html
Depends On Me
Imports Me
Suggests Me	DEqMS
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	farms_1.52.0.tar.gz
Windows Binary	farms_1.52.0.zip
macOS Binary (x86_64)	farms_1.52.0.tgz
macOS Binary (arm64)	farms_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/farms
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/farms
Bioc Package Browser	https://code.bioconductor.org/browse/farms/
Package Short Url	https://bioconductor.org/packages/farms/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive