eiR

DOI: 10.18129/B9.bioc.eiR  

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.17)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")

 

HTML	R Script	eiR: Accelerated Similarity Searching of Small Molecules
PDF		Reference Manual
Text		NEWS
Text		INSTALL
Text		LICENSE

Details

biocViews	BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version	1.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (10.5 years)
License	Artistic-2.0
Depends	R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports	snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9)
LinkingTo
Suggests	BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite
SystemRequirements
Enhances
URL	https://github.com/girke-lab/eiR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	eiR_1.40.0.tar.gz
Windows Binary	eiR_1.40.0.zip
macOS Binary (x86_64)	eiR_1.40.0.tgz
macOS Binary (arm64)	eiR_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/eiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/eiR
Bioc Package Browser	https://code.bioconductor.org/browse/eiR/
Package Short Url	https://bioconductor.org/packages/eiR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive