aroma.light

DOI: 10.18129/B9.bioc.aroma.light  

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: Release (3.17)

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aroma.light")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization
Version	3.30.0
In Bioconductor since	BioC 1.9 (R-2.4) (17 years)
License	GPL (>= 2)
Depends	R (>= 2.15.2)
Imports	stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0)
LinkingTo
Suggests	princurve (>= 2.1.4)
SystemRequirements
Enhances
URL	https://github.com/HenrikBengtsson/aroma.light https://www.aroma-project.org
BugReports	https://github.com/HenrikBengtsson/aroma.light/issues
Depends On Me
Imports Me	EDASeq, scone
Suggests Me	TIN
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	aroma.light_3.30.0.tar.gz
Windows Binary	aroma.light_3.30.0.zip
macOS Binary (x86_64)	aroma.light_3.30.0.tgz
macOS Binary (arm64)	aroma.light_3.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/aroma.light
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/aroma.light
Bioc Package Browser	https://code.bioconductor.org/browse/aroma.light/
Package Short Url	https://bioconductor.org/packages/aroma.light/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive