SPEM

DOI: 10.18129/B9.bioc.SPEM  

S-system parameter estimation method

Bioconductor version: Release (3.17)

This package can optimize the parameter in S-system models given time series data

Author: Xinyi YANG Developer, Jennifer E. DENT Developer and Christine NARDINI Supervisor

Maintainer: Xinyi YANG <yangxinyi at picb.ac.cn>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SPEM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SPEM")

 

PDF	R Script	Vignette for SPEM
PDF		Reference Manual
Text		NEWS

Details

biocViews	Network, NetworkInference, Software
Version	1.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (10.5 years)
License	GPL-2
Depends	R (>= 2.15.1), Rsolnp, Biobase, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	TMixClust
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SPEM_1.40.0.tar.gz
Windows Binary	SPEM_1.40.0.zip
macOS Binary (x86_64)	SPEM_1.40.0.tgz
macOS Binary (arm64)	SPEM_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SPEM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SPEM
Bioc Package Browser	https://code.bioconductor.org/browse/SPEM/
Package Short Url	https://bioconductor.org/packages/SPEM/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive