Bioconductor version: Release (3.17)
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("RedeR")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RedeR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
HTML | R Script | RedeR: hierarchical networks |
Reference Manual | ||
Text | NEWS |
biocViews | GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology |
Version | 2.4.3 |
In Bioconductor since | BioC 2.9 (R-2.14) (12 years) |
License | GPL (>= 3) |
Depends | R (>= 4.0), methods |
Imports | igraph |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf |
SystemRequirements | Java Runtime Environment (Java>= 11) |
Enhances | |
URL | http://genomebiology.com/2012/13/4/R29 |
Depends On Me | Fletcher2013b |
Imports Me | PANR, RTN, transcriptogramer, TreeAndLeaf |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RedeR_2.4.3.tar.gz |
Windows Binary | RedeR_2.4.3.zip |
macOS Binary (x86_64) | RedeR_2.4.3.tgz |
macOS Binary (arm64) | RedeR_2.4.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RedeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RedeR |
Bioc Package Browser | https://code.bioconductor.org/browse/RedeR/ |
Package Short Url | https://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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