Bioconductor version: Release (3.17)
implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.
Author: Christian Panse [aut, cre] , Tobias Kockmann [aut] , Roger Gine Bertomeu [ctb]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
Citation (from within R,
enter citation("MsBackendRawFileReader")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MsBackendRawFileReader")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendRawFileReader")
HTML | R Script | On Using and Extending the `MsBackendRawFileReader` Backend. |
Reference Manual | ||
Text | NEWS | |
Text | INSTALL |
biocViews | MassSpectrometry, Metabolomics, Proteomics, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.14 (R-4.1) (2 years) |
License | GPL-3 |
Depends | R (>= 4.1), methods, Spectra(>= 1.5.8) |
Imports | MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.7.4), utils, BiocParallel |
LinkingTo | |
Suggests | BiocStyle(>= 2.5), ExperimentHub, MsBackendMgf, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat |
SystemRequirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
Enhances | |
URL | https://github.com/fgcz/MsBackendRawFileReader |
BugReports | https://github.com/fgcz/MsBackendRawFileReader/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MsBackendRawFileReader_1.6.0.tar.gz |
Windows Binary | MsBackendRawFileReader_1.6.0.zip |
macOS Binary (x86_64) | MsBackendRawFileReader_1.6.0.tgz |
macOS Binary (arm64) | MsBackendRawFileReader_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MsBackendRawFileReader |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendRawFileReader |
Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendRawFileReader/ |
Package Short Url | https://bioconductor.org/packages/MsBackendRawFileReader/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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