Bioconductor version: Release (3.17)
Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.
Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]
Maintainer: Zongli Xu <xuz at niehs.nih.gov>
Citation (from within R,
enter citation("ENmix")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ENmix")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENmix")
HTML | R Script | ENmix User's Guide |
Reference Manual | ||
Text | NEWS |
biocViews | BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel |
Version | 1.36.08 |
In Bioconductor since | BioC 3.1 (R-3.2) (8.5 years) |
License | Artistic-2.0 |
Depends | parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0) |
Imports | grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors |
LinkingTo | |
Suggests | minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/Bioconductor/ENmix |
BugReports | https://github.com/Bioconductor/ENmix/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ENmix_1.36.08.tar.gz |
Windows Binary | ENmix_1.36.08.zip |
macOS Binary (x86_64) | ENmix_1.36.08.tgz |
macOS Binary (arm64) | ENmix_1.36.08.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ENmix |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ENmix |
Bioc Package Browser | https://code.bioconductor.org/browse/ENmix/ |
Package Short Url | https://bioconductor.org/packages/ENmix/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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