Bioconductor version: Release (3.17)
The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.
Author: Rishi Das Roy [aut, cre]
Maintainer: Rishi Das Roy <rishi.dasroy at gmail.com>
Citation (from within R,
enter citation("DELocal")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DELocal")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DELocal")
HTML | R Script | DELocal |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics |
Version | 1.0.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (< 6 months) |
License | MIT + file LICENSE |
Depends | |
Imports | DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats |
LinkingTo | |
Suggests | biomaRt, knitr, PCRedux, rmarkdown, stringr |
SystemRequirements | |
Enhances | |
URL | https://github.com/dasroy/DELocal |
BugReports | https://github.com/dasroy/DELocal/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DELocal_1.0.0.tar.gz |
Windows Binary | DELocal_1.0.0.zip |
macOS Binary (x86_64) | DELocal_1.0.0.tgz |
macOS Binary (arm64) | DELocal_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DELocal |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DELocal |
Bioc Package Browser | https://code.bioconductor.org/browse/DELocal/ |
Package Short Url | https://bioconductor.org/packages/DELocal/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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