ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap  

Make Complex Heatmaps

Bioconductor version: Release (3.17)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

 

HTML		complex_heatmap.html
HTML	R Script	Most probably asked questions
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Sequencing, Software, Visualization
Version	2.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (8.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Imports	circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools
LinkingTo
Suggests	testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick
SystemRequirements
Enhances
URL	https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/
Depends On Me	AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, recoup
Imports Me	airpart, ASURAT, BiocOncoTK, BioNERO, blacksheepr, BloodGen3Module, CATALYST, celda, CeTF, COCOA, cola, COTAN, cytoKernel, DEGreport, DEP, diffcyt, diffUTR, ELMER, fCCAC, FLAMES, gCrisprTools, GeneTonic, GenomicSuperSignature, gmoviz, GRaNIE, hermes, InterCellar, iSEE, LineagePulse, MatrixQCvis, MesKit, microbiomeMarker, MOMA, monaLisa, muscat, musicatk, MWASTools, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, RLSeq, scRNAseqApp, sechm, segmenter, signifinder, simplifyEnrichment, singleCellTK, sparrow, SPONGE, TBSignatureProfiler, TCGAWorkflow, Xeva, YAPSA
Suggests Me	artMS, bambu, BindingSiteFinder, clustifyr, CNVRanger, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, mastR, msImpute, NanoporeRNASeq, pareg, plotgardener, projectR, proteasy, QFeatures, scDblFinder, SPIAT, TCGAbiolinks, TCGAutils, weitrix
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ComplexHeatmap_2.16.0.tar.gz
Windows Binary	ComplexHeatmap_2.16.0.zip
macOS Binary (x86_64)	ComplexHeatmap_2.16.0.tgz
macOS Binary (arm64)	ComplexHeatmap_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ComplexHeatmap
Bioc Package Browser	https://code.bioconductor.org/browse/ComplexHeatmap/
Package Short Url	https://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive