CGHbase

DOI: 10.18129/B9.bioc.CGHbase  

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Release (3.17)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Infrastructure, Microarray, Software
Version	1.60.0
In Bioconductor since	BioC 2.3 (R-2.8) (15 years)
License	GPL
Depends	R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/tgac-vumc/CGHbase
BugReports	https://github.com/tgac-vumc/CGHbase/issues
Depends On Me	CGHcall, CGHnormaliter, CGHregions, GeneBreak
Imports Me	CGHnormaliter, QDNAseq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGHbase_1.60.0.tar.gz
Windows Binary	CGHbase_1.60.0.zip (64-bit only)
macOS Binary (x86_64)	CGHbase_1.60.0.tgz
macOS Binary (arm64)	CGHbase_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGHbase
Bioc Package Browser	https://code.bioconductor.org/browse/CGHbase/
Package Short Url	https://bioconductor.org/packages/CGHbase/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive