Bioconductor version: Release (3.17)
Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.
Author: Vincent Carey [aut, cre]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("BiocHail")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BiocHail")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocHail")
HTML | R Script | 01 BiocHail -- GWAS tutorial |
HTML | R Script | 02 Working with larger VCF: T2T by chromosome |
HTML | R Script | 03 Working with UK Biobank summary statistics |
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.0.1 |
In Bioconductor since | BioC 3.17 (R-4.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 4.3.0), graphics, stats, utils |
Imports | reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics |
LinkingTo | |
Suggests | knitr, testthat, BiocStyle, ggplot2, DT |
SystemRequirements | |
Enhances | |
URL | https://github.com/vjcitn/BiocHail |
BugReports | https://github.com/vjcitn/BiocHail/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | BiocHail_1.0.1.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/BiocHail |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocHail |
Bioc Package Browser | https://code.bioconductor.org/browse/BiocHail/ |
Package Short Url | https://bioconductor.org/packages/BiocHail/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
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