BaalChIP: Bayesian analysis of allele-specific transcription
factor binding in cancer genomes
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Documentation for package ‘BaalChIP’ version 1.26.0
Help Pages
| adjustmentBaalPlot | Method adjustmentBaalPlot |
| adjustmentBaalPlot-method | Method adjustmentBaalPlot |
| alleleCounts | Method alleleCounts |
| alleleCounts-method | Method alleleCounts |
| BaalChIP | BaalChIP-class |
| BaalChIP.get | Method BaalChIP.get |
| BaalChIP.get-method | Method BaalChIP.get |
| BaalChIP.report | Method BaalChIP.report |
| BaalChIP.report-method | Method BaalChIP.report |
| BaalChIP.run | Method BaalChIP.run |
| BaalChIP.run-method | Method BaalChIP.run |
| BaalObject | BaalObject example dataset |
| blacklist_hg19 | Blacklisted genomic regions |
| ENCODEexample | ENCODEexample example dataset |
| FAIREexample | FAIREexample example dataset |
| filter1allele | Method filter1allele |
| filter1allele-method | Method filter1allele |
| filterIntbias | Method filterIntbias |
| filterIntbias-method | Method filterIntbias |
| getASB | Method getASB |
| getASB-method | Method getASB |
| mergePerGroup | Method mergePerGroup |
| mergePerGroup-method | Method mergePerGroup |
| pickrell2011cov1_hg19 | Genomic regions of collapsed repeats |
| plotQC | Method plotQC |
| plotQC-method | Method plotQC |
| plotSimul | Method plotSimul |
| plotSimul-method | Method plotSimul |
| QCfilter | Method QCfilter |
| QCfilter-method | Method QCfilter |
| summaryASB | Method summaryASB |
| summaryASB-method | Method summaryASB |
| summaryQC | Method summaryQC |
| summaryQC-method | Method summaryQC |
| UniqueMappability50bp_hg19 | Genomic regions of unique mappability |