timecoursedata

DOI: 10.18129/B9.bioc.timecoursedata  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see timecoursedata.

A data package for timecourse RNA-seq and microarray gene expression data sets

Bioconductor version: 3.16

This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.

Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("timecoursedata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("timecoursedata")

 

HTML	R Script	timecoursedata: Time course gene expression datasets
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExpressionData, MicroarrayData, RNASeqData
Version	1.8.0
License	BSD 3-clause License + file LICENSE
Depends	R (>= 4.0), SummarizedExperiment
Imports
LinkingTo
Suggests	testthat (>= 1.0.0), knitr, rmarkdown, markdown, covr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	moanin
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	timecoursedata_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/timecoursedata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/timecoursedata
Package Short Url	https://bioconductor.org/packages/timecoursedata/
Package Downloads Report	Download Stats