oct4

DOI: 10.18129/B9.bioc.oct4  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see oct4.

Conditional knockdown of OCT4 in mouse ESCs

Bioconductor version: 3.16

This package provides the output of running Salmon on a set of 12 RNA-seq samples from King & Klose, "The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells", published in eLIFE, March 2017. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oct4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oct4")

 

HTML	R Script	Salmon quantifications for condition OCT4 knockdown in mouse ESCs
PDF		Reference Manual

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.14.0
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests	knitr, markdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	oct4_1.14.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/oct4
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/oct4
Package Short Url	https://bioconductor.org/packages/oct4/
Package Downloads Report	Download Stats