This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SFEData.
Bioconductor version: 3.16
Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.
Author: Lambda Moses [aut, cre] , Lior Pachter [aut, ths]
Maintainer: Lambda Moses <dlu2 at caltech.edu>
Citation (from within R,
enter citation("SFEData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SFEData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SFEData")
HTML | R Script | Example SpatialFeatureExperiment datasets |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue |
Version | 1.0.2 |
License | Artistic-2.0 |
Depends | |
Imports | AnnotationHub, BiocFileCache, ExperimentHub |
LinkingTo | |
Suggests | knitr, rmarkdown, SpatialFeatureExperiment, testthat (>= 3.0.0) |
SystemRequirements | |
Enhances | |
URL | https://github.com/pachterlab/SFEData |
BugReports | https://github.com/pachterlab/SFEData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | SpatialFeatureExperiment, Voyager |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SFEData_1.0.2.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/SFEData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SFEData |
Package Short Url | https://bioconductor.org/packages/SFEData/ |
Package Downloads Report | Download Stats |
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