This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mutations.
Bioconductor version: 3.16
Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.
Author: Marcin Kosinski <m.p.kosinski at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
Citation (from within R,
enter citation("RTCGA.mutations")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RTCGA.mutations")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.mutations")
HTML | R Script | Using RTCGA to download mutations data as included in RTCGA.mutations |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation Data, ExperimentData |
Version | 20151101.28.0 |
License | GPL-2 |
Depends | R (>= 3.2.0), RTCGA |
Imports | |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/RTCGA/RTCGA/issues |
Depends On Me | |
Imports Me | |
Suggests Me | RTCGA |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RTCGA.mutations_20151101.28.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.mutations |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCGA.mutations |
Package Short Url | https://bioconductor.org/packages/RTCGA.mutations/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: