MouseGastrulationData

DOI: 10.18129/B9.bioc.MouseGastrulationData  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: 3.16

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")

 

HTML	R Script	Available datasets
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version	1.12.0
License	GPL-3
Depends	R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports	methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/MarioniLab/MouseGastrulationData
BugReports	https://github.com/MarioniLab/MouseGastrulationData/issues
Depends On Me	OSCA.multisample
Imports Me
Suggests Me	miloR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseGastrulationData_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MouseGastrulationData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseGastrulationData
Package Short Url	https://bioconductor.org/packages/MouseGastrulationData/
Package Downloads Report	Download Stats