This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see HiContactsData.
Bioconductor version: 3.16
Provides a collection of Hi-C files (pairs and (m)cool). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R,
enter citation("HiContactsData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HiContactsData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiContactsData")
HTML | R Script | HiContactsData |
Reference Manual | ||
Text | LICENSE |
biocViews | ExperimentData, ExperimentHub, SequencingData |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | ExperimentHub |
Imports | BiocFileCache, AnnotationHub |
LinkingTo | |
Suggests | testthat, methods, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/js2264/HiContactsData |
BugReports | https://github.com/js2264/HiContactsData/issues |
Depends On Me | |
Imports Me | HiContacts |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HiContactsData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/HiContactsData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HiContactsData |
Package Short Url | https://bioconductor.org/packages/HiContactsData/ |
Package Downloads Report | Download Stats |
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