This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GSE103322.
Bioconductor version: 3.16
Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.
Author: Mariano Alvarez [aut, cre]
Maintainer: Mariano Alvarez <reef103 at gmail.com>
Citation (from within R,
enter citation("GSE103322")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GSE103322")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSE103322")
HTML | R Script | scRNASeq HNSC data using Bioconductor's ExperimentHub |
Reference Manual |
biocViews | CancerData, DNASeqData, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, Homo_sapiens_Data, RNASeqData, SingleCellData |
Version | 1.4.0 |
License | Artistic-2.0 |
Depends | Biobase, GEOquery |
Imports | |
LinkingTo | |
Suggests | ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GSE103322_1.4.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/GSE103322 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSE103322 |
Package Short Url | https://bioconductor.org/packages/GSE103322/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: