This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.
Bioconductor version: 3.16
Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.
Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]
Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>
Citation (from within R,
enter citation("FlowSorted.CordBloodCombined.450k")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("FlowSorted.CordBloodCombined.450k")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSorted.CordBloodCombined.450k")
HTML | R Script | FlowSorted.CordBloodCombined.450k |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
Version | 1.14.0 |
License | GPL-3 |
Depends | R (>= 3.6), minfi(>= 1.21.2), ExperimentHub(>= 1.9.1) |
Imports | SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, utils, AnnotationHub |
LinkingTo | |
Suggests | FlowSorted.Blood.EPIC, knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19 |
SystemRequirements | |
Enhances | |
URL | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k |
BugReports | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues. |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | FlowSorted.CordBloodCombined.450k_1.14.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSorted.CordBloodCombined.450k |
Package Short Url | https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/ |
Package Downloads Report | Download Stats |
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