vsclust

DOI: 10.18129/B9.bioc.vsclust  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see vsclust.

Feature-based variance-sensitive quantitative clustering

Bioconductor version: 3.16

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Author: Veit Schwaemmle [aut, cre]

Maintainer: Veit Schwaemmle <veits at bmb.sdu.dk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vsclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vsclust")

 

HTML	R Script	VSClust on Bioconductor object
HTML	R Script	VSClust workflow
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	GPL-2
Depends	R (>= 4.2.0)
Imports	matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, graphics
LinkingTo	Rcpp
Suggests	knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, clusterProfiler
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vsclust_1.0.0.tar.gz
Windows Binary	vsclust_1.0.0.zip
macOS Binary (x86_64)	vsclust_1.0.0.tgz
macOS Binary (arm64)	vsclust_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/vsclust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/vsclust
Bioc Package Browser	https://code.bioconductor.org/browse/vsclust/
Package Short Url	https://bioconductor.org/packages/vsclust/
Package Downloads Report	Download Stats