viper

DOI: 10.18129/B9.bioc.viper  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see viper.

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: 3.16

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

 

PDF	R Script	Using VIPER
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.32.0
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	file LICENSE
Depends	R (>= 2.14.0), Biobase, methods
Imports	mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests	bcellViper
SystemRequirements
Enhances
URL
Depends On Me	aracne.networks, vulcan
Imports Me	diggit, diggitdata, dorothea, RTN
Suggests Me	decoupleR, MethReg, MOMA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	viper_1.32.0.tar.gz
Windows Binary	viper_1.32.0.zip
macOS Binary (x86_64)	viper_1.32.0.tgz
macOS Binary (arm64)	viper_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/viper
Bioc Package Browser	https://code.bioconductor.org/browse/viper/
Package Short Url	https://bioconductor.org/packages/viper/
Package Downloads Report	Download Stats