rnaEditr

DOI: 10.18129/B9.bioc.rnaEditr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rnaEditr.

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: 3.16

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Author: Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

Maintainer: Lanyu Zhang <jennyzly2016 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaEditr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaEditr")

 

HTML	R Script	Introduction to rnaEditr
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	GenomicRanges, IRanges, BiocGenerics, GenomeInfoDb, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/TransBioInfoLab/rnaEditr
BugReports	https://github.com/TransBioInfoLab/rnaEditr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rnaEditr_1.8.0.tar.gz
Windows Binary	rnaEditr_1.8.0.zip (64-bit only)
macOS Binary (x86_64)	rnaEditr_1.8.0.tgz
macOS Binary (arm64)	rnaEditr_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rnaEditr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rnaEditr
Bioc Package Browser	https://code.bioconductor.org/browse/rnaEditr/
Package Short Url	https://bioconductor.org/packages/rnaEditr/
Package Downloads Report	Download Stats